Samples

Buy Analysis Credits

One analysis credit runs one analysis; Human pathogens takes two, since it classifies against all three kingdoms.

Account

Call the API from scripts with a token instead of a password. Each token has the reach of your account, except managing tokens, sign-in methods, connected storage and purchases. API reference →

Import FASTQ from Box

Import FASTQ from AWS S3

{
  "Version": "2012-10-17",
  "Statement": [{
    "Effect": "Allow",
    "Action": ["s3:GetObject", "s3:ListBucket"],
    "Resource": ["arn:aws:s3:::YOUR-BUCKET", "arn:aws:s3:::YOUR-BUCKET/*"]
  }]
}

Analyse a public NCBI SRA run

Paste a run accession, or an NCBI or ENA link to one. Fathom keeps no copy of the run: each analysis downloads it again.